CDS
| Accession Number | TCMCG072C17024 |
| gbkey | CDS |
| Protein Id | XP_021851826.1 |
| Location | complement(join(134503..134676,137385..137439,137529..137575,137678..137734,137814..137928,138700..138781,140055..140139,140219..140338,140446..140496,140578..140643,141423..141470,141610..141658,141737..141790,142179..142238,142856..142914,143021..143137,143237..143248)) |
| Gene | LOC110791391 |
| GeneID | 110791391 |
| Organism | Spinacia oleracea |
Protein
| Length | 416aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA396054 |
| db_source | XM_021996134.1 |
| Definition | flap endonuclease 1 isoform X2 [Spinacia oleracea] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs |
GO:0005575
[VIEW IN EMBL-EBI] GO:0005622 [VIEW IN EMBL-EBI] GO:0005623 [VIEW IN EMBL-EBI] GO:0005634 [VIEW IN EMBL-EBI] GO:0005730 [VIEW IN EMBL-EBI] GO:0031974 [VIEW IN EMBL-EBI] GO:0031981 [VIEW IN EMBL-EBI] GO:0043226 [VIEW IN EMBL-EBI] GO:0043227 [VIEW IN EMBL-EBI] GO:0043228 [VIEW IN EMBL-EBI] GO:0043229 [VIEW IN EMBL-EBI] GO:0043231 [VIEW IN EMBL-EBI] GO:0043232 [VIEW IN EMBL-EBI] GO:0043233 [VIEW IN EMBL-EBI] GO:0044422 [VIEW IN EMBL-EBI] GO:0044424 [VIEW IN EMBL-EBI] GO:0044428 [VIEW IN EMBL-EBI] GO:0044446 [VIEW IN EMBL-EBI] GO:0044464 [VIEW IN EMBL-EBI] GO:0070013 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGGGAATCAAGGGTTTAACGAAGCTACTAGCGGATAATGCACCGAAATGCATGAAAGAGCAGAAATTCGAGAGCTATTTCAATCGAAAAATCGCCATTGATGCTAGCATGAGCATCTATCAATTCCTTATTGTGGTCGGAAGAACTGGAACTGAGATGCTTACAAACGAGGCCGGCGAAGTCACTAGTCACTTACAGGGAATGTTTTCGCGAACCATTAGGCTTCTTGAAGCTGGAATAAAGCCTGTCTATGTCTTTGACGGGCCGCCACCTGATTTGAAGAAAAGAGAACTTGCAAAACGTTATGCCAAACGAGCAGATGCCACTGAGGATTTGACAGAGGCAATTGAGAAAGGTGATAAAGAAAGCATTGAGAAGTTCAGTAAACGGACCGTGAAGGTGACAAAACAACACAACGATGACTGCAAAAAGCTACTAGGATTAATGGGAGTACCTGTAGTTGAGGCTCCTTCTGAAGCAGAGGCACAGTGCGCTGCGCTTTGCAAATCAGGAAAAGTTTATGCTGTGGCTTCTGAAGATATGGACTCCTTAACCTTTGGAGCTCCTAAGTTTCTCCGCCATTTAATGGATCCAAGCTCAAAGAAAATCCCAGTCATGGAATTTGAGATGACGAAGGTGTTGGAGGAGCTGAATCTTACAATGGATCAATTCATTGACTTGTGCATTCTTTCTGGCTGTGATTATTGTGAGAGTATCAAAGGTATTGGTGGACTGACTGCATTGAAGCTCATCCGTCAACACGAATCTATCGAGAATATACTCGAGAACATGAATAAAGAGAGGTACCAAATACCTGATAATTGGCCGTATCAAGAGGCCAGATGCTTATTCAAAGAGCCTCACGTGTATCCTGGAAGCGAGGAACCAGAGCTCAAGTGGAGCTCTCCTGATGAGGAGGGTTTGGTGAACTTTTTAGTGAAGGAGAATGGTTTTAATATTGATAGAGTAACAAAGGCGATAGAAAAAATTAAGGCAGCTAAGAGCAAGTCATCCCAGGGACGGCTGGAGGCATTCTTTAAGCCAACTGTGACTGGTTCTGTTCCCATCAAAAGGAAGGGGACCAAATGCATGCTTGGCTCTTTCAAACAAGGAAATATGCCTAAAATCCGTTCTTCACCAGCTTTTAGTCATTGCCAGACTGAAATACATGTGGGCTTTAGCCTGCACTGTGAATTTTTGGGCTCCAAGCACTTGTCTTCGTCGTTTCCAGTTCTTTTCTTTGGCGTATGA |
| Protein: MGIKGLTKLLADNAPKCMKEQKFESYFNRKIAIDASMSIYQFLIVVGRTGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGIKPVYVFDGPPPDLKKRELAKRYAKRADATEDLTEAIEKGDKESIEKFSKRTVKVTKQHNDDCKKLLGLMGVPVVEAPSEAEAQCAALCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFEMTKVLEELNLTMDQFIDLCILSGCDYCESIKGIGGLTALKLIRQHESIENILENMNKERYQIPDNWPYQEARCLFKEPHVYPGSEEPELKWSSPDEEGLVNFLVKENGFNIDRVTKAIEKIKAAKSKSSQGRLEAFFKPTVTGSVPIKRKGTKCMLGSFKQGNMPKIRSSPAFSHCQTEIHVGFSLHCEFLGSKHLSSSFPVLFFGV |